安装RMySQL时出错（在Ubuntu 13.04中为MySQL 5.6.14）

Question

我试图在使用MySQL v5.6.14时在Ubuntu 13.04中安装RMySQL。 Ubuntu没有对MySQL 5.6.14的apt-get支持，所以我不得不手动安装它。现在，当我尝试安装RMySQL我得到如下：

（看起来却没有生成包文件，但我不知道为什么或如何调试呢？）。

elad@elad-ThinkPad-T430s:~/tmp$ sudo R CMD INSTALL --configure-args='--with-mysql-inc=/opt/mysql/server-5.6/include --with-mysql-lib=/opt/mysql/server-5.6/lib' RMySQL_0.9-3.tar.gz 
* installing to library ‘/usr/local/lib/R/site-library’ 
* installing *source* package ‘RMySQL’ ... 
** package ‘RMySQL’ successfully unpacked and MD5 sums checked 
checking for gcc... gcc 
checking for C compiler default output file name... a.out 
checking whether the C compiler works... yes 
checking whether we are cross compiling... no 
checking for suffix of executables... 
checking for suffix of object files... o 
checking whether we are using the GNU C compiler... yes 
checking whether gcc accepts -g... yes 
checking for gcc option to accept ANSI C... none needed 
checking how to run the C preprocessor... gcc -E 
checking for compress in -lz... yes 
checking for getopt_long in -lc... yes 
checking for mysql_init in -lmysqlclient... no 
checking for egrep... grep -E 
checking for ANSI C header files... yes 
checking for sys/types.h... yes 
checking for sys/stat.h... yes 
checking for stdlib.h... yes 
checking for string.h... yes 
checking for memory.h... yes 
checking for strings.h... yes 
checking for inttypes.h... yes 
checking for stdint.h... yes 
checking for unistd.h... yes 
checking mysql.h usability... no 
checking mysql.h presence... no 
checking for mysql.h... no 
configure: creating ./config.status 
config.status: creating src/Makevars 
** libs 
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/opt/mysql/server-5.6/include  -fpic -O2 -pipe -g -c RS-DBI.c -o RS-DBI.o 
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I/opt/mysql/server-5.6/include  -fpic -O2 -pipe -g -c RS-MySQL.c -o RS-MySQL.o 
gcc -std=gnu99 -shared -o RMySQL.so RS-DBI.o RS-MySQL.o -L/opt/mysql/server-5.6/lib -lmysqlclient -lz -L/usr/lib/R/lib -lR 
installing to /usr/local/lib/R/site-library/RMySQL/libs 
** R 
** inst 
** preparing package for lazy loading 
Creating a generic function for ‘format’ from package ‘base’ in package ‘RMySQL’ 
Creating a generic function for ‘print’ from package ‘base’ in package ‘RMySQL’ 
** help 
*** installing help indices 
** building package indices 
** installing vignettes 
** testing if installed package can be loaded 
Error : .onLoad failed in loadNamespace() for 'RMySQL', details: 
    call: dyn.load(file, DLLpath = DLLpath, ...) 
    error: unable to load shared object '/usr/local/lib/R/site-library/RMySQL/libs/RMySQL.so': 
    libmysqlclient.so.18: cannot open shared object file: No such file or directory 
Error: loading failed 
Execution halted 
ERROR: loading failed 
* removing ‘/usr/local/lib/R/site-library/RMySQL’ 
* restoring previous ‘/usr/local/lib/R/site-library/RMySQL’ 

更新：

这最终成为LD_LIBRARY_PATH问题。添加以下到/ usr/bin中/ R解决了这个问题：

LD_LIBRARY_PATH=$LD_LIBRARY_PATH/opt/mysql/server-5.6/lib 
export LD_LIBRARY_PATH 

Answer 1

你在本地安装后库运行ldconfig？

是否ldconfig -p返回有关mysql的一些信息？

在我的箱子，从Ubuntu的MySQL默认库[手动换行]

edd@max:~$ ldconfig -p | grep mysql 
     libmysqlclient.so.18 (libc6,x86-64) => \ 
       /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18 
     libmysqlclient.so (libc6,x86-64) => \ 
       /usr/lib/x86_64-linux-gnu/libmysqlclient.so 
edd@max:~$