ITK中的原始格式3D图像

如何加载和编写.mhd/ .raw在ITK中格式化3D图像？我试图使用下面的代码，但它没有得到加载，因为加载图像的维度显示为0,0,0。ITK中的原始格式3D图像

有人能指出我犯的错吗？

typedef float InputPixelType; 
const unsigned int DimensionOfRaw = 3; 
typedef itk::Image< InputPixelType, DimensionOfRaw > InputImageType; 

//typedef itk::RawImageIO<InputPixelType, DimensionOfRaw> ImageIOType; 
typedef itk::ImageFileReader<InputImageType > ReaderType; 

/* 
* --------------------Loader and saver of Raws, as well the function that takes a resulting (from inference matrix/vector) and creates a Raw out of it.----------------------- 
*/ 
InputImageType::Pointer loadRawImageItk(std::string RawFullFilepathname, ReaderType::Pointer & RawImageIO) { 
    //http://www.itk.org/Doxygen/html/classitk_1_1Image.html 
    //http://www.itk.org/Doxygen/html/classitk_1_1ImageFileReader.html 

    typedef itk::ImageFileReader<InputImageType> ReaderType; 

    ReaderType::Pointer reader = ReaderType::New(); 
    reader->SetFileName(RawFullFilepathname); 


    //ImageIOType::Pointer RawImageIO = ImageIOType::New(); 
    reader->SetImageIO(RawImageIO); 

    try { 
     reader->Update(); 
    } catch (itk::ExceptionObject& e) { 
     std::cerr << e.GetDescription() << std::endl; 
     exit(1); // You can choose to do something else, of course. 
    } 

    //InputImageType::Pointer inputImage = reader->GetOutput(); 
    InputImageType::Pointer inputImage = reader->GetOutput(); 

    return inputImage; 

} 


int saveRawImageItk(std::string RawFullFilepathname, InputImageType::Pointer & outputImageItkType , ImageIOType::Pointer & RawImageIO) { 
    std::cout << "Saving image to: " << RawFullFilepathname << "\n"; 

    typedef itk::ImageFileWriter<InputImageType> Writer1Type; 
    Writer1Type::Pointer writer1 = Writer1Type::New(); 

    writer1->SetInput(outputImageItkType); 
    writer1->SetFileName(RawFullFilepathname); 
    writer1->SetImageIO(RawImageIO); //seems like this is useless. 

    // Execution of the writer is triggered by invoking the \code{Update()} method. 
    try 
    { 
    writer1->Update(); 
    } 
    catch (itk::ExceptionObject & e) 
    { 
    std::cerr << "exception in file writer " << std::endl; 
    std::cerr << e.GetDescription() << std::endl; 
    std::cerr << e.GetLocation() << std::endl; 
    return 1; 
    } 

    return 0; 
}

来源

2016-06-14 Avijit Dasgupta

也许这是你的数据有问题。您至少应该提供一些示例数据。 – Trilarion

刚才我看到成功地使用下面的代码SimpleITK Python中的MHD和原始文件：

import SimpleITK as sitk 
import numpy as np 
def load_itk_image(filename): 
    itkimage = sitk.ReadImage(filename) 
    numpyImage = sitk.GetArrayFromImage(itkimage) 
    return numpyImage

也许你可以使用它作为参考。

是否应该使用ReadImage函数而不是ImageFileReader？你可以试试。

来源

2016-07-22 02:51:10 Kongsea