2011-05-12 54 views
0

我喜欢[] R: merge unequal dataframes and replace missing rows with 0R:循环合并dataframes和cbind这些

一个问题下面是该问题的数据:

df1 = data.frame(x=c('a', 'b', 'c', 'd', 'e')) 
df2 = data.frame(x=c('a', 'b', 'c'),y = c(0,1,0)) 
df3 = data.frame(x=c('a', 'b', 'c', 'd'),y = c(1,1,1,0)) 
df4 = data.frame(x=c('b', 'a', 'e'),y = c(0,1,0)) 
zz <- merge(df1, df2, all = TRUE) 
zz[is.na(zz)] <- 0 

在这个例子中我合并DF1 DF2与。现在我想创建一个循环来合并df3和df4以及更多的数据帧与df1。问题在于列表中的结果必须被绑定才能生成最终的数据框。

任何人都可以帮助我吗?

谢谢!


编辑! 这是我创建的循环。变量goterms包含一个包含10个变量的列表。变量是interestedGO中列表的名称。首先选择interestGO,计算结果为变量结果。这个结果必须与x合并。因为它是一个循环,所有10个结果必须联合起来才能创建最终的数据帧。

for (i in 1:length(goterms)){ 
    goilmn<-as.data.frame(interestedGO[i]) 
    resultILMN<-match(goilmn[,1], rownames(xx2),nomatch=0) 
    resultILMN[resultILMN] <- 1 
    result<-cbind(goilmn,resultILMN) 
    colnames(result) <- c('x','result') 

    zz<-merge(x, result, all=TRUE) 
    resultloop<-zz[is.na(zz)]<-0 
    standard[i]<-cbind(resultloop) 
} 

goterms: 
[1] "GO:0009611" "GO:0007596" "GO:0050817" "GO:0061082" "GO:0007599" 
[6] "GO:0050776" "GO:0006910" "GO:0034383" "GO:0019932" "GO:0002720" 

interestedGO: 
$`GO:0009611` 
[1] "ILMN_1651346" "ILMN_1651354" "ILMN_1651599" "ILMN_1651950" "ILMN_1652287" 
[6] "ILMN_1652445" "ILMN_1652693" "ILMN_1652825" "ILMN_1653324" "ILMN_1653395" 

$`GO:0007596` 
[1] "ILMN_1651599" "ILMN_1652693" "ILMN_1652825" "ILMN_1653324" "ILMN_1655595" 
[6] "ILMN_1656057" "ILMN_1659077" "ILMN_1659923" "ILMN_1659947" "ILMN_1662619" 
[11] "ILMN_1664565" "ILMN_1665132" "ILMN_1665859" "ILMN_1666175" "ILMN_1668052" 
[16] "ILMN_1670229" "ILMN_1670305" "ILMN_1670490" "ILMN_1670708" 
"ILMN_1671766"        

$`GO:0050817` 
[1] "ILMN_1651599" "ILMN_1652693" "ILMN_1652825" "ILMN_1653324" "ILMN_1655595" 
[6] "ILMN_1656057" "ILMN_1659077" "ILMN_1659923" "ILMN_1659947" "ILMN_1662619" 
[11] "ILMN_1664565" "ILMN_1665132" "ILMN_1665859" "ILMN_1666175" "ILMN_1668052" 
[16] "ILMN_1670229" "ILMN_1670305" "ILMN_1670490" "ILMN_1670708" "ILMN_1671766" 
[21] "ILMN_1671928" "ILMN_1675083" "ILMN_1678049" "ILMN_1678728" 
"ILMN_1680805"        

$`GO:0061082` 
[1] "ILMN_1661695" "ILMN_1665132" "ILMN_1716446" "ILMN_1737314" "ILMN_1772387" 
[6] "ILMN_1784863" "ILMN_1796094" "ILMN_1800317" "ILMN_1800512" "ILMN_1807074" 

x是所有ILMN代码的参考。这是x变量的头部。 X [1:100,]

[1] ILMN_1343291 ILMN_1343295 ILMN_1651228 ILMN_1651229 ILMN_1651238 
[6] ILMN_1651254 ILMN_1651259 ILMN_1651260 ILMN_1651262 ILMN_1651278 
[11] ILMN_1651282 ILMN_1651285 ILMN_1651286 ILMN_1651303 ILMN_1651310 
[16] ILMN_1651315 ILMN_1651330 ILMN_1651336 ILMN_1651343 ILMN_1651346 
[21] ILMN_1651347 ILMN_1651354 ILMN_1651358 ILMN_1651370 ILMN_1651373 
[26] ILMN_1651385 ILMN_1651396 ILMN_1651415 ILMN_1651428 ILMN_1651430 
[31] ILMN_1651433 ILMN_1651437 ILMN_1651438 ILMN_1651456 ILMN_1651457 
+0

cbind它们的代码无法运行。什么是'xx2'? – kohske 2011-05-12 08:45:50

回答

3

我不知道如果我没有你想要什么了解,但像他这样?

> zz <- Reduce(function(a,b)merge(a,b,all=TRUE, by="x"), list(df1, df2, df3, df4)) 
> zz[is.na(zz)] <- 0 
> zz 
    x y.x y.y y 
1 a 0 1 1 
2 b 1 1 0 
3 c 0 1 0 
4 d 0 0 0 
5 e 0 0 0 

您可以通过使用Reduce避免循环,但请注意,它不一定会导致性能改进。

如果你想单独dataframes,然后地图(仅仅mapply的包装)是有用的:

> zz <- Map(function(b)merge(df1,b,all=TRUE, by="x"), list(df2, df3, df4)) 
> zz 
[[1]] 
    x y 
1 a 0 
2 b 1 
3 c 0 
4 d NA 
5 e NA 

[[2]] 
    x y 
1 a 1 
2 b 1 
3 c 1 
4 d 0 
5 e NA 

[[3]] 
    x y 
1 a 1 
2 b 0 
3 c NA 
4 d NA 
5 e 0 

和do.call

> zz <- do.call("cbind", zz) 
> zz[is.na(zz)] <- 0 
> zz 
    x y x y x y 
1 a 0 a 1 a 1 
2 b 1 b 1 b 0 
3 c 0 c 1 c 0 
4 d 0 d 0 d 0 
5 e 0 e 0 e 0 
+0

嗨Kohske,我编辑我的问题。我希望现在清楚。谢谢 – Samantha 2011-05-12 08:00:52

+0

@Samantha我把一段代码放在'cbind'列表中。可能最好是显示输入(即数据)和**期望输出**的例子,以明确你的问题是什么。 – kohske 2011-05-12 08:05:58

+0

你的第一个输出zz是正确的,但代码是在一个循环中,所以我的想法是,没有办法在循环中使用此代码。 (zz < - Reduce(函数(a,b)合并(a,b,all = TRUE,by =“x”),list(df1,df2,df3,df4)))或者我错了? – Samantha 2011-05-12 08:25:15